The cloacal cavity extends along the dorsal side of the pharynx, the cloacal siphon or atriopore being situated in this case and in Ciona at its anterior extremity. Right and left this cavity is continued over the sides of the pharynx as the lateral atria, or peribranchial cavities, which terminate ventrally on either side of the endostyle. Beneath the endostyle runs a large ventral blood-channel, which is continued behind into the abdomen. A corresponding dorsal blood-channel runs longitudinally between the pharyngeal roof and the cloacal floor, and is also continued into the abdomen. The two are connected by transverse chan nels between the rows of stigmata, and these are connected by smaller channels running longitudinally between adjacent stigmata, the whole constituting a vascular network moulded to the form of the pharynx. The heart is always situated in the course of the ventral blood-sinus, but at different points according to the position of the intestinal loop. In "simple" Ascidians, in which the loop lies against the left side of the pharynx, the heart lies close behind the endostyle, as it does also in the young Clavelina; but during the later growth of Clavelina and its allies the intestinal loop stretches considerably downwards, and the heart is carried with it, in Polyclinids even beneath it into the "postabdomen."
The heart itself in all Tunicates is part of a larger structure, the cardio-pericardial vesicle. This is at first a closed oval sac, arising ventrally to the gut. Its dorsal wall becomes invaginated, and the invaginated epithelium becomes contractile. The inner vesicle constitutes the heart, the outer the pericardium, the two being separated by the pericardial cavity. The lips of the cardiac invagination tend to meet, thereby closing its cavity, except at the two ends, where they remain open to the blood in the ventral sinus. The heart undergoes waves of contraction either from behind forwards, or from before backwards, the whole course of the circulation being subject to periodic reversal.
In Clavelina the roof of the cardiac groove is partly provided by a third structure, the epicardiurn, an epithelial septum which arises as a pair of outgrowths from the hinder wall of the pharynx on either side of the endostyle. These epicardial diverticula fuse behind the pharynx into a single tube, which becomes flattened dorso-ventrally and extends down the abdominal cavity as a thin broad septum between the main dorsal and ventral blood channels. It continues its course into the small branching root lets by which the Clavelina is attached (the creeping stolon). Its relations with the circulatory system appear to be secondary; its real raison d'etre is to be found in the budding process.